Intro to Linux

This course is for researchers who have never used Linux and/or a compute cluster and introduces concepts and best practices for both.

NGS Data Analysis

NGS workflow, general data analysis pipeline, data formats, short read alignment software, general workflow for DNA-seq, RNA-seq and ChIP-seq and corresponding software resources. Data visualization tools such as IGV.

Working with Big Data in Linux

In this Intro to Linux sequel, learn how to effectively use Linux when handling large datasets.

Reference Sheets

Bash/Command Line Cheat Sheet 1

Bash/Command Line Cheat Sheet 2